Tsunami simulation and detection using global navigation satellite system reflectometry

In this thesis, research for tsunami remote sensing using the Global Navigation Satellite System-Reflectometry (GNSS-R) delay-Doppler maps (DDMs) is presented. Firstly, a process for simulating GNSS-R DDMs of a tsunami-dominated sea sur- face is described. In this method, the bistatic scattering Zavorotny-Voronovich (Z-V) model, the sea surface mean square slope model of Cox and Munk, and the tsunami- induced wind perturbation model are employed. The feasibility of the Cox and Munk model under a tsunami scenario is examined by comparing the Cox and Munk model- based scattering coefficient with the Jason-1 measurement. A good consistency be- tween these two results is obtained with a correlation coefficient of 0.93. After con- firming the applicability of the Cox and Munk model for a tsunami-dominated sea, this work provides the simulations of the scattering coefficient distribution and the corresponding DDMs of a fixed region of interest before and during the tsunami. Fur- thermore, by subtracting the simulation results that are free of tsunami from those with presence of tsunami, the tsunami-induced variations in scattering coefficients and DDMs can be clearly observed. Secondly, a scheme to detect tsunamis and estimate tsunami parameters from such tsunami-dominant sea surface DDMs is developed. As a first step, a procedure to de- termine tsunami-induced sea surface height anomalies (SSHAs) from DDMs is demon- strated and a tsunami detection precept is proposed. Subsequently, the tsunami parameters (wave amplitude, direction and speed of propagation, wavelength, and the tsunami source location) are estimated based upon the detected tsunami-induced SSHAs. In application, the sea surface scattering coefficients are unambiguously re- trieved by employing the spatial integration approach (SIA) and the dual-antenna technique. Next, the effective wind speed distribution can be restored from the scat- tering coefficients. Assuming all DDMs are of a tsunami-dominated sea surface, the tsunami-induced SSHAs can be derived with the knowledge of background wind speed distribution. In addition, the SSHA distribution resulting from the tsunami-free DDM (which is supposed to be zero) is considered as an error map introduced during the overall retrieving stage and is utilized to mitigate such errors from influencing sub- sequent SSHA results. In particular, a tsunami detection procedure is conducted to judge the SSHAs to be truly tsunami-induced or not through a fitting process, which makes it possible to decrease the false alarm. After this step, tsunami parameter estimation is proceeded based upon the fitted results in the former tsunami detec- tion procedure. Moreover, an additional method is proposed for estimating tsunami propagation velocity and is believed to be more desirable in real-world scenarios. The above-mentioned tsunami-dominated sea surface DDM simulation, tsunami detection precept and parameter estimation have been tested with simulated data based on the 2004 Sumatra-Andaman tsunami event

Sea ice remote sensing using spaceborne global navigation satellite system reflectometry

In this research, the application of spaceborne Global Navigation Satellite System- Reflectometry (GNSS-R) delay-Doppler maps (DDMs) for sea ice remote sensing is investigated. Firstly, a scheme is presented for detecting sea ice from TechDemoSat-1 (TDS-1) DDMs. Less spreading along delay and Doppler axes is observed in the DDMs of sea ice relative to those of seawater. This enables us to distinguish sea ice from seawater through studying the values of various DDM observables, which describe the extent of DDM spreading. Secondly, three machine learning-based methods, specifically neural networks (NNs), convolutional neural networks (CNNs) and support vector machine (SVM), are developed for detecting sea ice and retrieving sea ice concentration (SIC) from TDS-1 data. For these three methods, the architectures with different outputs (i.e. category labels and SIC values) are separately devised for sea ice detection (classification problem) and SIC retrieval (regression problem) purposes. In the training phase, different designs of input that include the cropped DDM (40-by-20), the full-size DDM (128-by-20), and the feature selection (FS) (1-by-20) are tested. The SIC data obtained by Nimbus-7 SMMR and DMSP SSM/I-SSMIS sensors are used as the target data, which are also regarded as ground-truth data in this work. In the experimental stage, CNN output resulted from inputting full-size DDM data shows better accuracy than that of the NN-based method. Besides, performance of both CNNs and NNs is enhanced with the cropped DDMs. It is found that when DDM data are adequately preprocessed CNNs and NNs share similar accuracy. Further comparison is made between NN and SVM with FS. The SVM algorithm demonstrates improved accuracy compared with the NN method. In addition, the designed FS is proven to be effective for both SVM- and NN-based approaches. Lastly, a reflectivity

Associations between Aquaglyceroporin Gene Polymorphisms and Risk of Stroke among Patients with Hypertension

Background: Dysregulations ofAQP7andAQP9were found to be related to lipid metabolism abnormality, which had been provento be one of the mechanisms of stroke. However, limited epidemiological studies explore the associations betweenAQP7andAQP9and the risk of stroke among patients with hypertension in China. Aims: We aimed to investigate the associations between genetic variants in AQP7andAQP9and the risk of stroke among patients with hypertension, as well as to explore gene-gene andgene-environment interactions. Methods: Baseline blood samples were drawn from 211 cases with stroke and 633 matched controls. Genomic DNA was extracted by a commercially available kit. Genotyping of 5 single nucleotide polymorphisms (SNPs) in AQP7 (rs2989924, rs3758269, and rs2542743) and AQP9 (rs57139208, rs16939881) was performed by the polymerase chain reaction assay with TaqMan probes. Results: Participants with the rs2989924 GG genotype were found to be with a 1.74-fold increased risk of stroke compared to those with the AA+AG genotype, and this association remained significant after adjustment for potential confounders (odds ratio (OR): 1.74, 95% confidence interval (CI): 1.23-2.46). The SNP rs3758269 CC+TT genotype was found to be with a 33% decreased risk of stroke after multivariate adjustment (OR: 0.67, 95% CI: 0.45-0.99) compared to the rs3758269 CC genotype. The significantly increased risk of stroke was prominent among males, patients aged 60 or above, and participants who were overweight and with a harbored genetic variant in SNP rs2989924. After adjusting potential confounders, the SNP rs3758269 CT+TT genotype was found to be significantly associated with a decreased risk of stroke compared to the CC genotype among participants younger than 60 years old or overweight. No statistically significant associations were observed between genotypes of rs2542743, rs57139208, or rs16939881 with the risk of stroke. Neither interactions nor linkage disequilibrium had been observed in this study. Conclusions: This study suggests that SNPs rs2989924 and rs3758269 are associated with the risk of stroke among patients with hypertension, while there were no statistically significant associations between rs2542743, rs57139208, and rs16939881 and the risk of stroke being observed

Comparative study on the gut microbiotas of four economically important Asian carp species

Gut microbiota of four economically important Asian carp species (silver carp, Hypophthalmichthys molitrix; bighead carp, Hypophthalmichthys nobilis; grass carp, Ctenopharyngodon idella; common carp, Cyprinus carpio) were compared using 16S rRNA gene pyrosequencing. Analysis of more than 590,000 quality-filtered sequences obtained from the foregut, midgut and hindgut of these four carp species revealed high microbial diversity among the samples. The foregut samples of grass carp exhibited more than 1,600 operational taxonomy units (OTUs) and the highest alpha-diversity index, followed by the silver carp foregut and midgut. Proteobacteria, Firmicutes, Bacteroidetes and Fusobacteria were the predominant phyla regardless of fish species or gut type. Pairwise (weighted) UniFrac distance-based permutational multivariate analysis of variance with fish species as a factor produced significant association (P &lt; 0.01). The gut microbiotas of all four carp species harbored saccharolytic or proteolytic microbes, likely in response to the differences in their feeding habits. In addition, extensive variations were also observed even within the same fish species. Our results indicate that the gut microbiotas of Asian carp depend on the exact species, even when the different species were cohabiting in the same environment. This study provides some new insights into developing commercial fish feeds and improving existing aquaculture strategies.</p

Modeling and Theoretical Analysis of GNSS-R Soil Moisture Retrieval Based on the Random Forest and Support Vector Machine Learning Approach

Global Navigation Satellite System-Reflectometry (GNSS-R) as a microwave remote sensing technique can retrieve the Earth’s surface parameters using the GNSS reflected signal from the surface. These reflected signals convey the surface features and therefore can be utilized to detect certain physical properties of the reflecting surface such as soil moisture content (SMC). Up to now, a serial of electromagnetic models (e.g., bistatic radar and Fresnel equations, etc.) are employed and solved for SMC retrieval. However, due to the uncertainty of the physical characteristics of the sites, complexity, and nonlinearity of the inversion process, etc., it is still challenging to accurately retrieve the soil moisture. The popular machine learning (ML) methods are flexible and able to handle nonlinear problems. It can dig out and model the complex interactions between input and output and ultimately make good predictions. In this paper, two typical ML methods, specifically, random forest (RF) and support vector machine (SVM), are employed for SMC retrieval from GNSS-R data of self-designed experiments (in situ and airborne). A comprehensive simulated dataset involving different types of soil is constructed firstly to represent the complex interactions between the variables (reflectivity, elevation angle, dielectric constant, and SMC) for the requirement of training ML regression models. Correspondingly, the main task of soil moisture retrieval (regression) is addressed. Specifically, the post-processed data (reflectivity and elevation angle) from sensor acquisitions are used to make predictions by these two adopted ML methods and compared with the commonly used GNSS-R retrieval method (electromagnetic models). The results show that the RF outperforms the SVM method, and it is more suitable for handling the inversion problem. Moreover, the RF regression model built by the comprehensive dataset demonstrates satisfactory accuracy and strong universality, especially when the soil type is not uniform or unknown. Furthermore, the typical task of detecting water/soil (classification) is discussed. The ML algorithms demonstrate a high potential and efficiency in SMC retrieval from GNSS-R data

Necessary Sequencing Depth and Clustering Method to Obtain Relatively Stable Diversity Patterns in Studying Fish Gut Microbiota

The 16S rRNA gene is one of the most commonly used molecular markers for estimating bacterial diversity during the past decades. However, there is no consistency about the sequencing depth (from thousand to millions of sequences per sample), and the clustering methods used to generate OTUs may also be different among studies. These inconsistent premises make effective comparisons among studies difficult or unreliable. This study aims to examine the necessary sequencing depth and clustering method that would be needed to ensure a stable diversity patterns for studying fish gut microbiota. A total number of 42 samples dataset of Siniperca chuatsi (carnivorous fish) gut microbiota were used to test how the sequencing depth and clustering may affect the alpha and beta diversity patterns of fish intestinal microbiota. Interestingly, we found that the sequencing depth (resampling 1000-11,000 per sample) and the clustering methods (UPARSE and UCLUST) did not bias the estimates of the diversity patterns during the fish development from larva to adult. Although we should acknowledge that a suitable sequencing depth may differ case by case, our finding indicates that a shallow sequencing such as 1000 sequences per sample may be also enough to reflect the general diversity patterns of fish gut microbiota. However, we have shown in the present study that strict pre-processing of the original sequences is required to ensure reliable results. This study provides evidences to help making a strong scientific choice of the sequencing depth and clustering method for future studies on fish gut microbiota patterns, but at the same time reducing as much as possible the costs related to the analysis.</p

Quantification of the relationship between sea surface roughness and the size of the glistening zone for GNSS-R

A formulation of the relationship between sea-surface roughness and extension of the glistening zone (GZ) of a Global Navigation Satellite System Reflectometry (GNSS-R) system is presented. First, an analytical expression of the link between GZ area, viewing geometry, and surface mean square slope (MSS) is derived. Then, a strategy for retrieval of surface roughness from the delay-Doppler map (DDM) is illustrated, including details of data preprocessing, quality control, and GZ area estimation from the DDM. Next, an example for application of the proposed approach to spaceborne GNSS-R remote sensing is provided, using DDMs from the TechDemoSat-1 mission. The algorithm is first calibrated using collocated in situ roughness estimates using data sets from the National Data Buoy Center, its retrieval performance is then assessed, and some of the limitations of the suggested technique are discussed. Overall, good correlation is found between buoy-derived MSS and estimates obtained using the proposed strategy (r=0.7